References

Blount, Zachary D, Christina Z Borland, and Richard E Lenski. 2008. “Historical Contingency and the Evolution of a Key Innovation in an Experimental Population of Escherichia Coli.” Proceedings of the National Academy of Sciences 105 (23): 7899–7906.
Bolger, Anthony M, Marc Lohse, and Bjoern Usadel. 2014. “Trimmomatic: A Flexible Trimmer for Illumina Sequence Data.” Bioinformatics 30 (15): 2114–20.
Li, Heng, and Richard Durbin. 2010. “Fast and Accurate Long-Read Alignment with Burrows–Wheeler Transform.” Bioinformatics 26 (5): 589–95.
Li, Heng, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, and Richard Durbin. 2009. “The Sequence Alignment/Map Format and SAMtools.” Bioinformatics 25 (16): 2078–79.
Martin, Marcel. 2011. “Cutadapt Removes Adapter Sequences from High-Throughput Sequencing Reads.” EMBnet. Journal 17 (1): 10–12.